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mbhall88

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seqkit

Manipulate FASTA/FASTQ files with seqkit — filter, subset, convert, search, deduplicate, split, sample, translate, rename, and summarise sequence data. Use whenever a task touches a FASTA or FASTQ file, even when the format is not named ("how many reads", "pull out these contigs", "what is the N50", "find this motif"), and especially before writing Python, Biopython, awk, or bash to parse, filter, count, convert, or summarise sequence files — seqkit almost certainly already does it, in one strea

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25 set