199-biotechnologies/claude-deep-research-skill

deep-research

Use when the user needs multi-source research with citation tracking, evidence persistence, and structured report generation.

ソースを見る

使い方

  1. インストールコマンドをコピーし、自分の環境へ導入する前にソースを確認します。
  2. 必要なツール、認証情報、対応環境を原文で確認します。
  3. 入力と成果物を指定し、出力を資料と照合します。
npx skills add https://github.com/199-biotechnologies/claude-deep-research-skill --skill deep-research

開始前の確認

  • 導入にはモデル契約、API枠、ファイルへのアクセス許可は含まれません。
  • スター数や導入数は活動の指標であり、独立した品質・安全性試験ではありません。
リポジトリの原文

見出し、例、コード、表、リンク、参照画像を含む原文を表示しています。

Deep Research

Core Purpose

Deliver citation-tracked research reports through a structured pipeline with evidence persistence, source identity management, claim-level verification, and progressive context management.

Autonomy Principle: Operate independently. Infer assumptions from context. Only stop for critical errors or incomprehensible queries. Surface high-materiality assumptions explicitly in the Introduction and Methodology rather than silently defaulting.


Decision Tree

Request Analysis
+-- Simple lookup? --> STOP: Use WebSearch
+-- Debugging? --> STOP: Use standard tools
+-- Complex analysis needed? --> CONTINUE

Mode Selection
+-- Initial exploration --> quick (3 phases, 2-5 min)
+-- Standard research --> standard (6 phases, 5-10 min) [DEFAULT]
+-- Critical decision --> deep (8 phases, 10-20 min)
+-- Comprehensive review --> ultradeep (8+ phases, 20-45 min)

Default assumptions: Technical query = technical audience. Comparison = balanced perspective. Trend = recent 1-2 years.


Workflow Overview

PhaseNameQuickStdDeepUltra
1SCOPEYYYY
2PLAN-YYY
3RETRIEVEYYYY
4TRIANGULATE-YYY
4.5OUTLINE REFINEMENT-YYY
5SYNTHESIZE-YYY
6CRITIQUE--YY
7REFINE--YY
8PACKAGEYYYY

Note: Phases 3-5 operate as an evidence loop per section (retrieve → evidence store → refine outline → draft → verify claims → delta-retrieve if needed), not as strict sequential gates.


Execution

On invocation, load relevant reference files:

  1. Phase 1-7: Load methodology.md for detailed phase instructions
  2. Phase 8 (Report): Load report-assembly.md for progressive generation
  3. HTML/PDF output: Load html-generation.md
  4. Quality checks: Load quality-gates.md
  5. Long reports (>18K words): Load continuation.md

Templates:

Scripts:

  • python scripts/validate_report.py --report [path]
  • python scripts/verify_citations.py --report [path]
  • python scripts/md_to_html.py [markdown_path]

Output Contract

Required sections:

  • Executive Summary (200-400 words)
  • Introduction (scope, methodology, assumptions)
  • Main Analysis (4-8 findings, 600-2,000 words each, cited)
  • Synthesis & Insights (patterns, implications)
  • Limitations & Caveats
  • Recommendations
  • Bibliography (COMPLETE - every citation, no placeholders)
  • Methodology Appendix

Output files (all to `~/Documents/[Topic]_Research_[YYYYMMDD]/`):

  • Markdown (primary source of truth)
  • sources.jsonl — stable source registry with canonical IDs
  • evidence.jsonl — append-only evidence store with quotes and locators
  • claims.jsonl — atomic claim ledger with support status
  • run_manifest.json — query, mode, assumptions, provider config
  • HTML (McKinsey style, auto-opened)
  • PDF (professional print, auto-opened)

Quality standards:

  • 10+ sources, 3+ per major claim (cluster-independent, not just count)
  • All factual claims cited immediately [N] with evidence backing in evidence.jsonl
  • Claim-support verification mandatory: no unsupported factual claims pass delivery
  • No placeholders, no fabricated citations
  • Prose-first (>=80%), bullets sparingly

When to Use / NOT Use

Use: Comprehensive analysis, technology comparisons, state-of-the-art reviews, multi-perspective investigation, market analysis.

Do NOT use: Simple lookups, debugging, 1-2 search answers, quick time-sensitive queries.

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