google-deepm
17 skills with substantive source documentation and an official publisher or observed installation demand. Read each skill’s original documentation through its card.
google-deepmindliterature-search-arxiv
Search for scientific papers, preprints, and publications on arXiv. Extract metadata, abstracts, and download full-text PDFs or HTML versions of papers. Use when the user asks to find research papers, literature, or specific arXiv IDs.
- instalações
- 2
- GitHub Stars
- 3,1 mil
- Atualizado
- 15 de set.
google-deepmindliterature-search-openalex
Query the OpenAlex scholarly database for research papers, authors, institutions, topics, sources, publishers, funders, geo-locations, and keywords. Use when searching academic papers, resolving DOIs, downloading open-access PDFs, finding an author's publications, aggregating bibliometric data (citation counts, h-index, impact factor), exploring the research taxonomies, or performing DOI lookups.
- instalações
- 2
- GitHub Stars
- 3,1 mil
- Atualizado
- 15 de set.
google-deepmindalphagenome-atlas-website-links
- Constructs deep-links and URLs for the AlphaGenome Atlas website. Supports generating single-variant exploration links (1-based chr:pos:refalt), genomic locus views (1-based closed chr:start-end), candidate summary tables, and AlphaGenome reference vs. alternate predictions. Use whenever visualizing, exploring, charting, or linking genetic variants and genomic loci on the AlphaGenome Atlas, or when asked to inspect, view, or link predictions for a genomic variant.
- instalações
- 1
- GitHub Stars
- 3 mil
- Atualizado
- 8 de set.
google-deepmindalphagenome-variant-impact-score
- Score, annotate, and analyze the functional impact of genetic variants using AlphaGenome Variant Impact (AVI) scores. Query variants in chr:pos:refalt format, annotate VCF/tabular callsets, perform saturation mutagenesis window scans (1-based closed chr:start-end), and extract GENCODE v46 GTF gene/exon/junction coordinates all via the AlphaGenome Atlas API.
- instalações
- 1
- GitHub Stars
- 3 mil
- Atualizado
- 8 de set.
google-deepmindclinical-trials-database
Query ClinicalTrials.gov via APIv2. Use when you want to search for trials by condition, drug, location, status, or phase; retrieve trial details by NCT ID; check eligibility/inclusion criteria; count trials across conditions or time periods; identify a sponsor's trial portfolio; find recruiting trials for patient matching.
- instalações
- 1
- GitHub Stars
- 3,2 mil
- Atualizado
- 9 de out.
google-deepmindensembl-database
Query the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve gene structures (exons), and get variant consequence and effect predictions (VEP). Use this skill as a primary ID translator, genomic sequence database and variant effect prediction tool.
- instalações
- 1
- GitHub Stars
- 3 mil
- Atualizado
- 8 de set.
google-deepmindgtex-database
Use when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 non-diseased tissue sites.
- instalações
- 1
- GitHub Stars
- 3 mil
- Atualizado
- 8 de set.
google-deepmindjaspar-database
Query the JASPAR database for Transcription Factor (TF) binding profiles. Use when retrieving Position Frequency Matrices (PFMs) or Position Weight Matrices (PWMs) for specific TFs, resolving gene symbols to JASPAR Matrix IDs, or getting TF metadata. Supports multiple output formats (MEME, TRANSFAC, PFM, JASPAR, YAML).
- instalações
- 1
- GitHub Stars
- 3 mil
- Atualizado
- 8 de set.
google-deepmindliterature-search-biorxiv
Browse, filter, and download life sciences, biology, and medical preprints from bioRxiv and medRxiv. Supports fetching paper metadata by DOI, and browsing by date range with category and keyword filters. Keyword filtering is local, so date ranges MUST be narrow (1-4 weeks) with a category to prevent timeouts.
- instalações
- 1
- GitHub Stars
- 3 mil
- Atualizado
- 8 de set.
google-deepmindliterature-search-europepmc
Search Europe PMC for scientific literature and download open-access full texts and PDFs. Retrieve full-text XML/plain text by PMCID, get citation lists and bibliography.
- instalações
- 1
- GitHub Stars
- 3,2 mil
- Atualizado
- 9 de out.
google-deepmindopentargets-database
Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.
- instalações
- 1
- GitHub Stars
- 3 mil
- Atualizado
- 8 de set.
google-deepmindprotein-sequence-msa
Performs multiple sequence alignment of proteins with EBI Clustal Omega. Use when you need to align multiple sequences to assess similarity, domain conservation, or key residue conservation. Supports up to 4000 sequences and a maximum file size of 4 MB. Do not use to search for homologous proteins in a database (use MMseqs2, BLAST), align non-protein sequences (DNA, RNA), perform structural alignment (use Foldseek, PyMOL), or if you only have a single sequence.
- instalações
- 1
- GitHub Stars
- 3 mil
- Atualizado
- 8 de set.
google-deepmindpubchem-database
Query PubChem, search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics. Use when a user asks about a specific chemical, drug, or molecule.
- instalações
- 1
- GitHub Stars
- 3,2 mil
- Atualizado
- 15 de set.
google-deepmindreactome-database
Query the Reactome database (Analysis and Content Services). Use when the user asks about pathway analysis, gene list enrichment, retrieving results by token, finding unmapped or not-found identifiers, mapping identifiers, reaction participants (inputs, outputs), pathway hierarchy (including top-level pathways), diagram export, cross-reference mapping, or searching the knowledgebase.
- instalações
- 1
- GitHub Stars
- 3 mil
- Atualizado
- 8 de set.
google-deepminduniprot-database
- Access protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc, and UniRef. Use when searching for proteins, mapping identifiers, or retrieving functional annotations and publications. Don't use for sequence alignment, protein folding, or sequence similarity search (use specialized skills for those tasks).
- instalações
- 1
- GitHub Stars
- 3 mil
- Atualizado
- 8 de set.
google-deepminduv
- Checks whether the uv Python package manager is installed and installs it if missing. Ensures uv is on PATH. Use when another skill requires uv as a prerequisite.
- instalações
- 1
- GitHub Stars
- 3,1 mil
- Atualizado
- 15 de set.
google-deepmindworkflow-skill-creator
Distills a completed user workflow or interaction into a reusable agent skill. Use when the user asks to turn their workflow, interaction, or multi-step process into a skill, or when they say "make this a skill", "create a skill from what we just did", "package this workflow" or similar. Do not use for creating skills from scratch without an existing workflow (use a generic skill-creator for that).
- instalações
- 1
- GitHub Stars
- 3 mil
- Atualizado
- 8 de set.