k-dense-ai
177 skills with substantive source documentation and an official publisher or observed installation demand. Read each skill’s original documentation through its card.
k-dense-aipydicom
Reads, inspects, writes, transforms, and preflights local DICOM datasets and pixel data. Applies to DICOM metadata, transfer syntaxes, compression plugins, frames, private elements, JSON, and bounded de-identification review.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aipyhealth
Builds and validates PyHealth clinical machine-learning pipelines for EHR, signals, imaging, and medical codes. Use for PyHealth dataset loading, MIMIC-III/IV, eICU or OMOP prediction tasks, patient-level evaluation, mortality/readmission/length-of-stay modeling, medication recommendation, sleep staging, Trainer checkpoints, and ICD/ATC/NDC/RxNorm mapping.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aipylabrobot
Develops and reviews PyLabRobot lab-automation resources, liquid-handling plans, offline simulations, and supported-device integrations. Supports PyLabRobot protocols and API questions; keep physical execution behind an explicit operator safety gate.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aipymatgen
Analyzes, validates, converts, and transforms materials structures and computed materials data with pymatgen. Use for local phase diagrams, symmetry sensitivity, electronic-structure I/O, and bounded Materials Project queries.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aipymc
Builds and checks Bayesian models with PyMC, including hierarchical models, NUTS MCMC, variational inference, mutable-data predictions, posterior predictive checks, diagnostics, and PSIS-LOO model comparison. Use for probabilistic modeling and uncertainty inference in PyMC.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aipymoo
Solves and validates single-, multi-, and many-objective optimization with pymoo, including NSGA-II, NSGA-III, MOEA/D, constraints, Pareto approximations, reference directions, and ZDT/DTLZ benchmarks for engineering and research problems.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aipyopenms
Processes mass spectrometry data with pyOpenMS. Supports proteomics and metabolomics workflows—feature detection, peptide/protein identification, label-free quantification, adduct/accurate-mass annotation, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. For simple spectral comparison and small-molecule library matching use matchms.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aipysam
Provides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix data with pysam, including pileup, coverage, indexing, and CRAM references.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aipytdc
Provides Therapeutics Data Commons workflows through PyTDC for registry discovery, dataset access, task-aware splits, evaluator metrics, benchmark groups, and bounded molecular-oracle scoring. Use when working with TDC therapeutic ML datasets or benchmarks.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aipytorch-lightning
Deep learning framework (PyTorch Lightning / lightning package). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard, MLflow), distributed training (DDP, FSDP, DeepSpeed), for scalable neural network training.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aipyzotero
Manages Zotero reference libraries using the pyzotero Python client: retrieves, creates, updates, and deletes items, collections, tags, and attachments via the Zotero Web API v3 or local API. Applies when working with Zotero libraries programmatically, managing bibliographic references, exporting citations, searching library contents, uploading PDF attachments, or building research automation workflows that integrate with Zotero.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aiqiime2-amplicon
Processes paired-end 16S amplicon reads into QIIME 2 ASVs and taxonomy with retained artifact provenance. Checks paired FASTQ manifests, primer orientation diagnostics, predicted post-trimming overlap, sample IDs, runtime versions and read retention, and guides selection of compatible taxonomic classifiers.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aiqiskit
Builds, simulates, transpiles, and executes quantum circuits with Qiskit and IBM Quantum Runtime. Use for Qiskit 2.x circuits and operators, V2 Sampler or Estimator primitives, target-aware transpilation, local or noisy simulation, IBM QPU execution, Runtime sessions or batches, error mitigation, and Qiskit ecosystem packages.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aiqutip
Simulate and audit closed and open quantum-system models with QuTiP 5, including deterministic, trajectory, steady-state, spectral, and phase-space workflows. Use for local quantum-dynamics work where physical assumptions, dimensions, and numerical convergence must be explicit.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-airdkit
Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-airelion
Validates and executes RELION single-particle cryo-EM refinement and half-map postprocessing. Supports STAR optics/acquisition checks, particle-stack consistency, gold-standard half sets, soft-mask validation, diagnostic Fourier shell correlation, and restart guidance.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-airelsa-severity-assessment
Supports multivariate severity assessment and exploratory endpoint-time score forecasting for laboratory animal studies using the RELSA (RELative Severity Assessment) score and ARIMA-based foRcast forecasting. Use when combining welfare readouts — body weight or weight loss, body temperature, clinical or nesting scores, biomarkers, activity, heart rate, burrowing, wheel running — into one severity score per animal per day, when asking which animals are at risk of reaching a humane endpoint at a
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-airesearch-grants
Supports research proposal preparation and review for NSF, NIH, DOE, DARPA, and Taiwan NSTC, including opportunity-specific requirements, aims, review criteria, budgets, broader impacts, forms, and resubmissions. Use for investigator-authored grant development, compliance matrices, and proposal critiques.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-airesearch-lookup
Compiles current scholarly evidence for a scientific manuscript or research brief when the user explicitly asks to gather literature, references, background evidence, competing findings, or a manuscript research packet. Uses Parallel Search by default, Parallel Extract for source retrieval, Parallel Research for explicitly deep/exhaustive work, optional explicit Parallel Chat, and optional Perplexity only when requested or allowed as a failure fallback.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-airowan
Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer and tautomer ensembles, docking and analogue docking, protein-ligand cofolding, MSA generation, molecular dynamics, permeability, descriptor workflows, and related small-molecule or protein modeling tasks. Ideal for programmatic batch screening, multi-step chemistry pipelines, and workflows that would otherwise require maintaining local HPC/GPU in
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aiscanpy
Performs Scanpy single-cell RNA-seq QC, normalization, HVG selection, PCA/UMAP/t-SNE, clustering, exploratory marker ranking, pseudobulk preparation, visualization, and Seurat or SingleCellExperiment RDS conversion to h5ad. Applies to established exploratory scRNA-seq workflows with explicit count and expression provenance; complementary skills cover scvi-tools models and AnnData format details.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aischolar-evaluation
Provides qualitative-first, evidence-traceable developmental review of scholarly works and audit low-stakes research-assessment rubrics with optional local quality controls. Never use for ranking people or consequential decisions.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aiscientific-brainstorming
Facilitates evidence-aware scientific ideation with independent generation, structured discussion, explicit assumptions, transparent evaluation, adversarial review, and decision logs. Use for early-stage research brainstorming or prioritizing candidate directions; hand off empirical validation, study design, ethics or regulatory review, and clinical questions to appropriate experts or skills.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź
k-dense-aiscientific-critical-thinking
Evaluates scientific claims and evidence quality. Applies to experimental design validity, biases and confounders, statistical interpretation, evidence grading frameworks (GRADE, Cochrane Risk of Bias), and teaching critical analysis. Supports evidence appraisal and identifying flaws; formal peer review writing belongs to peer-review.
- instalacje
- 0
- GitHub Stars
- 54,6 tys.
- Aktualizacja
- 19 paź